FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006772134

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772134
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70986251
Sequences flagged as poor quality0
Sequence length8
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NTATCCCG2682679737.791539378519936No Hit
NAGCAAGA2036354728.68660721355745No Hit
NCTGTGAT1357903919.129111354253656No Hit
NGCAGTTC1021686814.392742053668956No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)