FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006772137

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772137
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences110361219
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCAAGA3141732528.46772198121516No Hit
ATATCCCG2823894725.587744731235706No Hit
TCTGTGAT2753595724.95075466681824No Hit
CGCAGTTC2161090219.58197109076876No Hit
CGCAGTTA1448110.13121547705992628No Hit
ATATCCCA1352280.12253217319029432No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)