FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006772143

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772143
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109345454
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCAAGA3109190628.434566653315095No Hit
ATATCCCG2790900025.523694839659267No Hit
TCTGTGAT2719472524.87046695146558No Hit
CGCAGTTC2134371119.51952296068934No Hit
CGCAGTTA1523130.1392952284966506No Hit
ATATCCCA1351370.12358721378576927No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)