FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006772151

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772151
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2563460
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCAAGA71508827.89542259290178No Hit
ATATCCCG67393826.290170316681362No Hit
TCTGTGAT60935423.77076295319607No Hit
CGCAGTTC52039220.300375274043674No Hit
CGCAGTTA37120.1448042879545614No Hit
ATATCCCA30780.12007209006577048No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)