FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006772171

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772171
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2837535
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGTGCGG80938828.524335382647266No Hit
GGTATGCA73681425.966692921849422No Hit
ACACCTTC62562322.048115706061775No Hit
CTCGAAAT60707921.394590727515254No Hit
ACCCCTTC101020.3560132297927603No Hit
TAGTGCGA40090.14128460089479072No Hit
ACACCTTA34500.12158440336418758No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)