FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006772177

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772177
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2930215
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCCAGC100967234.457266787590676No Hit
CGATAGCT72024324.579868712705384No Hit
AATGTTAG59091820.166370044518917No Hit
GTCAGCTA55476818.93267217593248No Hit
CGATAGCA109870.3749554213598661No Hit
AATGTTAA34400.11739752885027208No Hit
GTCAGCAA32500.1109133630126117No Hit
TCGCCCGC29630.10111885987888261No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)