FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006772180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences206566498
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAGAGC6248357330.24864806489579No Hit
TTATCGTT4959968624.011486122013842No Hit
CATCTCCA4675971022.636637815295682No Hit
GCGGATAG4316698720.89738046486125No Hit
TTATCGTA6648790.32187165219792807No Hit
CATCTCAA5602850.27123711028881364No Hit
GCGGCTAG2435300.11789423859042233No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)