FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006772193

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772193
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3450495
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAGAGC99212528.753120929026128No Hit
TTATCGTT83930624.324220148123676No Hit
CATCTCCA77966022.59559860251935No Hit
GCGGATAG74956621.72343388412387No Hit
TTATCGTA96360.2792642794729452No Hit
CATCTCAA92260.2673819263612902No Hit
AGCAGCGC91240.2644258287579028No Hit
CAGCTCCA48400.14026972941563456No Hit
CAACTCCA41270.119606027540976No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)