FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006772211

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772211
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3439379
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGATTA95727127.832669793006236No Hit
TGGAGGCT90157426.21327861802959No Hit
ATTCTAAG88951725.862721148207278No Hit
GAATCCGC63742118.53302587472913No Hit
CCCGATAA80670.23454815535013732No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)