FastQCFastQC Report
Thu 27 Oct 2022
EGAF00006772814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27568990
Sequences flagged as poor quality0
Sequence length36-100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGT445940.16175420281990743No Hit
CTGAACTCCTCACACCCAATTGGACCAATCTATCACCCTATAGAAGAACT389410.14124928044153956No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG377770.13702714535425492No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA292750.10618814835073753No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)