FastQCFastQC Report
Thu 27 Oct 2022
EGAF00006772827

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772827
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30762318
Sequences flagged as poor quality0
Sequence length36-100
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT397160.12910600560074828No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAG383670.12472077039188008No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG371730.12083939838343782No Hit
CTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC327160.1063508933234485No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)