FastQCFastQC Report
Thu 27 Oct 2022
EGAF00006772948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38455565
Sequences flagged as poor quality0
Sequence length36-100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG662470.17226895509141527No Hit
CTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAA574320.14934639498860566No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA487110.12666827284945625No Hit
CTTGACCAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCT482300.12541747858859958No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG404660.10522794295181985No Hit
CAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTA386180.10042239660241632No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)