FastQCFastQC Report
Thu 27 Oct 2022
EGAF00006772967

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772967
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79143178
Sequences flagged as poor quality0
Sequence length36-100
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1020480.1289409934991491No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAACAATCTCGTAT884700.11178474536364966TruSeq Adapter, Index 13 (97% over 40bp)
CTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTGTGAAGTAGGC826000.10436780792401337No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)