FastQCFastQC Report
Mon 5 Sep 2022
EGAF00006772975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77131874
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCATTCATACAGGTCCCTAAACTACCAAACCTGCATTAAAAATTTCGGT927930.12030435044272358No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA891640.1155994213235374No Hit
GCTTTAATTTATTAATGCAAACAGTACCTAACAAACCCACAGGTCCTAAA878600.11390881025398138No Hit
ACCCTGGGGTTAGTATAGCTTAGTTAAACTTTCGTTTATTGCTAAAGGTT854190.1107441004220901No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)