FastQCFastQC Report
Tue 13 Sep 2022
EGAF00006772989

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772989
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25074489
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGC467440.1864205487896483No Hit
GTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGG402320.16044992980714384No Hit
ACCCTGGGGTTAGTATAGCTTAGTTAAACTTTCGTTTATTGCTAAAGGTT376790.15026826668332105No Hit
ATCTAAAACACTCTTTACGCCGGCTTCTATTGACTTGGGTTAATCGTGTG363870.14511561930534259No Hit
GTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGCTCCA340130.13564782915416543No Hit
GTATAGCTTAGTTAAACTTTCGTTTATTGCTAAAGGTTAATCACTGCTGT274300.10939405385290205No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC267600.10672201535193797No Hit
GTTATATGTTTGGGATTTTTTAGGTAGTGGGTGTTGAGCTTGAACGCTTT255350.10183657182405591No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)