FastQCFastQC Report
Mon 5 Sep 2022
EGAF00006772990

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772990
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25074489
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGC451750.18016319295679367No Hit
GTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGG388490.1549343637670941No Hit
ACCCTGGGGTTAGTATAGCTTAGTTAAACTTTCGTTTATTGCTAAAGGTT359780.14348447938460482No Hit
ATCTAAAACACTCTTTACGCCGGCTTCTATTGACTTGGGTTAATCGTGTG344130.13724307602041264No Hit
GTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGCTCCA330060.13163179516838808No Hit
GTATAGCTTAGTTAAACTTTCGTTTATTGCTAAAGGTTAATCACTGCTGT271260.10818166623455416No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)