FastQCFastQC Report
Mon 5 Sep 2022
EGAF00006773145

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006773145
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54498962
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGTACTACGT578730.10619101332608866No Hit
GGTCTAGGGTGTAGCCTGAGAATAGGGGAAATCAGTGAATGAAGCCTCCT561480.10302581542745712No Hit
CCCTAAGATAGAGGAGACACCTGCTAGGTGTAAGGAGAAGATGGTTAGGT558260.10243497848637924No Hit
GTTTTATATTGATAATTGTTGTGATGAAATTGATGGCCCCTAAGATAGAG547040.10037622367926934No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)