FastQCFastQC Report
Sat 22 Oct 2022
EGAF00006809500

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006809500
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4506545
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGAGTGTAGGAGTGAAAGGCCAATCAAACTTGGAGATAGCTCGTACTCCCCGAAAGGCATTTAGGTGCCGCGT154750.34338944801394417No Hit
GTTTCGACGGGGTATAGAAGCCACGAAGCTCGCAGGCCAATGGTTTTGAAGCCGAAAGCTAAACCGCAAAATTCA123070.27309169219435286No Hit
GTTTGATCCTGGCTCAGGATGAACGCTGGCTACAGGCTTAACACATGCAAGTCGAGGGGAAACGACGGGGAAGCT108560.24089407739188223No Hit
GTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGAGACAATTAAAAGCTTG103010.22857865615454856No Hit
GACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGAGACAATTAAAAGCTTGCTTTTAAACGTCGAGTG66210.14691964686916476No Hit
GAAGAATCCAGACCGCCGTCTAAGGCCCCGAAATTCTGTCTGAGTTAGTCTAACGAAGTCCGGTCCCCATGACAG64310.14270355671584328No Hit
GGTGGATGCCTTGGCGTTTCGAGTCGAAGAAGGACGCGATAAGCTGCGAAAAGCCATGGGGAGCCGCAAGTAGGC63310.1404845618983057No Hit
GGGAAACAGCCCAGACCGCCGACTAAGGTCCCCAATGCTGTACTAAGTGGAAAAGGATGTAGGACTTCCCAGACA62070.13773300832455904No Hit
CGGGTGAGTAACGCGTAGACAACCTGCCGCAAAGATGGGGACAACAGTTCGAAAGGACTGCTAATACCGAATGTT56600.12559510667262838No Hit
CGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGAGACAATTAAAAGCTTGCTTTTAAACGTCGAGTGGC53590.11891593227184019No Hit
CGAGAGGAGAAGAATCCAGACCGCCGTCTAAGGCCCCGAAATTCTGTCTGAGTTAGTCTAACGAAGTCCGGTCCC52570.11665255755795181No Hit
CGAGACCTGACGAACTCCGAATGCTCACGGACTGCAGCCATGCAGTAAGGGGGCGGGTGCTAAGGTCCGTCCCCG51060.11330187538347003No Hit
GGACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGAGACAATTAAAAGCTTGCTTTTAAACGTCGAGT48630.10790971797685367No Hit
CCCGTATTCAAGAGGGAAACAGCCCAGACCGCCGACTAAGGTCCCCAATGCTGTACTAAGTGGAAAAGGATGTAG46990.10427056647609201No Hit
GTGAAAGGCCAATCAAACTTGGAGATAGCTCGTACTCCCCGAAAGGCATTTAGGTGCCGCGTGTGGCGATCTCCG45790.10160777269504688No Hit
CTTGACAGTACGGCCTCCCCTTCGGGGGAAGCTGACAGCGCAGGTAACCATACTCCCGAGAAAATCCGCTAAGCT45400.1007423647162072No Hit
CAGGACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGAGACAATTAAAAGCTTGCTTTTAAACGTCGA45240.10038732554540118No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)