FastQCFastQC Report
Sat 22 Oct 2022
EGAF00006809506

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006809506
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4014522
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGAGTGTAGGAGTGAAAGGCCAATCAAACTTGGAGATAGCTCGTACTCCCCGAAAGGCATTTAGGTGCCGCGT134600.3352827559545072No Hit
GTTTCGACGGGGTATAGAAGCCACGAAGCTCGCAGGCCAATGGTTTTGAAGCCGAAAGCTAAACCGCAAAATTCA106080.2642406742322No Hit
GTTTGATCCTGGCTCAGGATGAACGCTGGCTACAGGCTTAACACATGCAAGTCGAGGGGAAACGACGGGGAAGCT95500.23788635359327961No Hit
GTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGAGACAATTAAAAGCTTG90810.22620376722309654No Hit
GGTGGATGCCTTGGCGTTTCGAGTCGAAGAAGGACGCGATAAGCTGCGAAAAGCCATGGGGAGCCGCAAGTAGGC56970.1419097964838653No Hit
GACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGAGACAATTAAAAGCTTGCTTTTAAACGTCGAGTG56570.14091341385101389No Hit
GAAGAATCCAGACCGCCGTCTAAGGCCCCGAAATTCTGTCTGAGTTAGTCTAACGAAGTCCGGTCCCCATGACAG56540.14083868515355003No Hit
GGGAAACAGCCCAGACCGCCGACTAAGGTCCCCAATGCTGTACTAAGTGGAAAAGGATGTAGGACTTCCCAGACA54320.1353087615412246No Hit
CGGGTGAGTAACGCGTAGACAACCTGCCGCAAAGATGGGGACAACAGTTCGAAAGGACTGCTAATACCGAATGTT52440.13062576316682284No Hit
CGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGAGACAATTAAAAGCTTGCTTTTAAACGTCGAGTGGC46930.11690059239929437No Hit
CGAGAGGAGAAGAATCCAGACCGCCGTCTAAGGCCCCGAAATTCTGTCTGAGTTAGTCTAACGAAGTCCGGTCCC45880.11428508798805935No Hit
CGAGACCTGACGAACTCCGAATGCTCACGGACTGCAGCCATGCAGTAAGGGGGCGGGTGCTAAGGTCCGTCCCCG43310.10788332957198889No Hit
GGACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGAGACAATTAAAAGCTTGCTTTTAAACGTCGAGT42540.10596529300374989No Hit
CCCGTATTCAAGAGGGAAACAGCCCAGACCGCCGACTAAGGTCCCCAATGCTGTACTAAGTGGAAAAGGATGTAG41560.10352415555326387No Hit
CAGGACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGAGACAATTAAAAGCTTGCTTTTAAACGTCGA40190.1001115450357477No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)