FastQCFastQC Report
Sat 22 Oct 2022
EGAF00006809528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006809528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3970766
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGAGTGTAGGAGTGAAAGGCCAATCAAACTTGGAGATAGCTCGTACTCCCCGAAAGGCATTTAGGTGCCGCGT134040.33756710921771765No Hit
GTTTCGACGGGGTATAGAAGCCACGAAGCTCGCAGGCCAATGGTTTTGAAGCCGAAAGCTAAACCGCAAAATTCA103680.2611083100842508No Hit
GTTTGATCCTGGCTCAGGATGAACGCTGGCTACAGGCTTAACACATGCAAGTCGAGGGGAAACGACGGGGAAGCT90950.22904900465048808No Hit
GTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGAGACAATTAAAAGCTTG90610.22819274668917788No Hit
GGTGGATGCCTTGGCGTTTCGAGTCGAAGAAGGACGCGATAAGCTGCGAAAAGCCATGGGGAGCCGCAAGTAGGC55510.1397967042127388No Hit
GAAGAATCCAGACCGCCGTCTAAGGCCCCGAAATTCTGTCTGAGTTAGTCTAACGAAGTCCGGTCCCCATGACAG55510.1397967042127388No Hit
GGGAAACAGCCCAGACCGCCGACTAAGGTCCCCAATGCTGTACTAAGTGGAAAAGGATGTAGGACTTCCCAGACA55420.13957004769356846No Hit
GACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGAGACAATTAAAAGCTTGCTTTTAAACGTCGAGTG55020.13856268538614464No Hit
CGGGTGAGTAACGCGTAGACAACCTGCCGCAAAGATGGGGACAACAGTTCGAAAGGACTGCTAATACCGAATGTT48290.12161381456373908No Hit
CGAGAGGAGAAGAATCCAGACCGCCGTCTAAGGCCCCGAAATTCTGTCTGAGTTAGTCTAACGAAGTCCGGTCCC46900.11811323054544136No Hit
CGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGAGACAATTAAAAGCTTGCTTTTAAACGTCGAGTGGC46820.1179117580839566No Hit
CGAGACCTGACGAACTCCGAATGCTCACGGACTGCAGCCATGCAGTAAGGGGGCGGGTGCTAAGGTCCGTCCCCG43690.11002914802836532No Hit
GGACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGAGACAATTAAAAGCTTGCTTTTAAACGTCGAGT42640.1073848219713778No Hit
CCCGTATTCAAGAGGGAAACAGCCCAGACCGCCGACTAAGGTCCCCAATGCTGTACTAAGTGGAAAAGGATGTAG41240.10385905389539449No Hit
GTGAAAGGCCAATCAAACTTGGAGATAGCTCGTACTCCCCGAAAGGCATTTAGGTGCCGCGTGTGGCGATCTCCG39890.10045920610783914No Hit
CAAGAGGGAAACAGCCCAGACCGCCGACTAAGGTCCCCAATGCTGTACTAAGTGGAAAAGGATGTAGGACTTCCC39800.1002325495886688No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)