FastQCFastQC Report
Sat 22 Oct 2022
EGAF00006809532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006809532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3929909
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGAGTGTAGGAGTGAAAGGCCAATCAAACTTGGAGATAGCTCGTACTCCCCGAAAGGCATTTAGGTGCCGCGT137280.34932106570406596No Hit
GTTTCGACGGGGTATAGAAGCCACGAAGCTCGCAGGCCAATGGTTTTGAAGCCGAAAGCTAAACCGCAAAATTCA103560.26351755218759515No Hit
GTTTGATCCTGGCTCAGGATGAACGCTGGCTACAGGCTTAACACATGCAAGTCGAGGGGAAACGACGGGGAAGCT92930.23646857980680977No Hit
GTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGAGACAATTAAAAGCTTG88070.22410188123948926No Hit
GACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGAGACAATTAAAAGCTTGCTTTTAAACGTCGAGTG56040.14259872175157237No Hit
GGGAAACAGCCCAGACCGCCGACTAAGGTCCCCAATGCTGTACTAAGTGGAAAAGGATGTAGGACTTCCCAGACA55400.14097018531472358No Hit
GGTGGATGCCTTGGCGTTTCGAGTCGAAGAAGGACGCGATAAGCTGCGAAAAGCCATGGGGAGCCGCAAGTAGGC54390.13840015125032157No Hit
GAAGAATCCAGACCGCCGTCTAAGGCCCCGAAATTCTGTCTGAGTTAGTCTAACGAAGTCCGGTCCCCATGACAG54250.1380439089047609No Hit
CGGGTGAGTAACGCGTAGACAACCTGCCGCAAAGATGGGGACAACAGTTCGAAAGGACTGCTAATACCGAATGTT49160.12509195505544785No Hit
CGAGAGGAGAAGAATCCAGACCGCCGTCTAAGGCCCCGAAATTCTGTCTGAGTTAGTCTAACGAAGTCCGGTCCC45150.11488815644331715No Hit
CGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGAGACAATTAAAAGCTTGCTTTTAAACGTCGAGTGGC44560.11338684941559715No Hit
CGAGACCTGACGAACTCCGAATGCTCACGGACTGCAGCCATGCAGTAAGGGGGCGGGTGCTAAGGTCCGTCCCCG43340.11028245183285414No Hit
GGACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGAGACAATTAAAAGCTTGCTTTTAAACGTCGAGT41990.10684725778637623No Hit
CCCGTATTCAAGAGGGAAACAGCCCAGACCGCCGACTAAGGTCCCCAATGCTGTACTAAGTGGAAAAGGATGTAG40820.10387008961276203No Hit
GTGAAAGGCCAATCAAACTTGGAGATAGCTCGTACTCCCCGAAAGGCATTTAGGTGCCGCGTGTGGCGATCTCCG40380.10275047081242847No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)