FastQCFastQC Report
Sat 22 Oct 2022
EGAF00006811078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006811078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3845122
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCGACGGGGTATAGAAGCCACGAAGCTCGCAGGCCAATGGTTTTGAAGCCGAAAGCTAAACCGCAAAATTCA96420.2507592736979477No Hit
AGACGGTCGAAGAAGGTAATATCTTTGACAATACCGTGCCAAATAGATCTCTTTCCTCTTATGGCTTGCCTCAGC76870.19991563336611948No Hit
GTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGAGACAATTAAAAGCTTG62270.16194544672444722No Hit
GGTGGATGCCTTGGCACTAGGAGCCGAAGAAGGACGTGACAAACGACGATATGCCTTGGGTAGCTGTAAGTAAGC47320.12306501588246095No Hit
GGCATACGGTGGATGCCTTGGCGTCAGGAGTCGAAGAAGGACGCGATAAGCTGCGAAAAGCCGTGGGGAGCCGCA46240.12025626235006327No Hit
GTTTATGGTGGATGTCTTGGAGCCAACCGGCGAAGAAGGCCGTGATAAGCTGCGAAAAGCTTCGGGGAGGAGCAC43670.11357246922204288No Hit
GGTTTATGGTGGATGTCTTGGAGCCAACCGGCGAAGAAGGCCGTGATAAGCTGCGAAAAGCTTCGGGGAGGAGCA41910.10899524124332076No Hit
GGTGGATGCCTTGGCGTTTCGAGTCGAAGAAGGACGCGATAAGCTGCGAAAAGCCATGGGGAGCCGCAAGTAGGC38660.10054297366897591No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)