FastQCFastQC Report
Sat 22 Oct 2022
EGAF00006811091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006811091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3936377
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCATCCTCTCAGACCGGCT73950.18786310355944055No Hit
CCGGCATTCTCTCTGCCATACGGTCCAGCTGTCCTTCCGGTCAGCCTTCGTCCTATATGGTACGCTCCCCTACCC55610.14127203771386734No Hit
CCCCTACCCAAGCATTGCTGCTTGCCGCGACTTCGGTTCTGTACTTGAGCCCCGGATATTTTCGGCGCAGGGCCT55290.14045910744829573No Hit
CCGGCAACAGAGCTTTACGATCCGAAGACCTTCTTCACTCACGCGGCGTTGCTCCGTCAGGCTTTCGCCCATTGC53100.13489561594329No Hit
CTCGCATTCTGACTCCCAGGCCTTGCATACAGCCATTCGTAGTTTGACTGGGTTCGGTAGGCTTTACGCCCCCTT52970.1345653630229015No Hit
CCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCATCCTCTCAGACCGGCTA47730.12125362992416631No Hit
CTTTATTTGAAACCTCCGGGCCGGCAGATGGCTAGTGCTTCCAGAGGGGCTGCTGAGCTAGGCTCAGGCAGCGTA47680.12112660957017075No Hit
GGCCTATTCACTGCGGCTGACGTAAAGTCAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTT45540.11569013841916057No Hit
CCCGGATATTTTCGGCGCAGGGCCTCTCGACCAGTGAGCTATTACGCACTCTTTCAATGGTGGCTGCTTCTGAGC44740.11365781275523151No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)