FastQCFastQC Report
Sat 22 Oct 2022
EGAF00006811099

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006811099
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3797750
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCATCCTCTCAGACCGGCT69090.18192350733987228No Hit
CCGGCATTCTCTCTGCCATACGGTCCAGCTGTCCTTCCGGTCAGCCTTCGTCCTATATGGTACGCTCCCCTACCC51990.13689684681719438No Hit
CCCCTACCCAAGCATTGCTGCTTGCCGCGACTTCGGTTCTGTACTTGAGCCCCGGATATTTTCGGCGCAGGGCCT51790.13637021920874204No Hit
CTCGCATTCTGACTCCCAGGCCTTGCATACAGCCATTCGTAGTTTGACTGGGTTCGGTAGGCTTTACGCCCCCTT49020.12907642683167667No Hit
CCGGCAACAGAGCTTTACGATCCGAAGACCTTCTTCACTCACGCGGCGTTGCTCCGTCAGGCTTTCGCCCATTGC48800.12849713646237904No Hit
CTTTATTTGAAACCTCCGGGCCGGCAGATGGCTAGTGCTTCCAGAGGGGCTGCTGAGCTAGGCTCAGGCAGCGTA46680.12291488381278388No Hit
CCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCATCCTCTCAGACCGGCTA44490.1171483115002304No Hit
GGCCTATTCACTGCGGCTGACGTAAAGTCAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTT42950.11309327891514713No Hit
CCCGGATATTTTCGGCGCAGGGCCTCTCGACCAGTGAGCTATTACGCACTCTTTCAATGGTGGCTGCTTCTGAGC41540.1093805542755579No Hit
CACGGTTTCAGGTTCTATTTCACTCCCCTCCCGGGGTGCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCG39230.10329800539793299No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)