FastQCFastQC Report
Sat 22 Oct 2022
EGAF00006811102

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006811102
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3908911
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCGACGGGGTATAGAAGCCACGAAGCTCGCAGGCCAATGGTTTTGAAGCCGAAAGCTAAACCGCAAAATTCA96030.24566944604264462No Hit
AGACGGTCGAAGAAGGTAATATCTTTGACAATACCGTGCCAAATAGATCTCTTTCCTCTTATGGCTTGCCTCAGC77400.19800911302406218No Hit
GTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGAGACAATTAAAAGCTTG63980.1636773004041279No Hit
GGTGGATGCCTTGGCACTAGGAGCCGAAGAAGGACGTGACAAACGACGATATGCCTTGGGTAGCTGTAAGTAAGC46280.11839614665056328No Hit
GTTTATGGTGGATGTCTTGGAGCCAACCGGCGAAGAAGGCCGTGATAAGCTGCGAAAAGCTTCGGGGAGGAGCAC45980.11762866946829949No Hit
GGCATACGGTGGATGCCTTGGCGTCAGGAGTCGAAGAAGGACGCGATAAGCTGCGAAAAGCCGTGGGGAGCCGCA45410.11617046282199825No Hit
GGTTTATGGTGGATGTCTTGGAGCCAACCGGCGAAGAAGGCCGTGATAAGCTGCGAAAAGCTTCGGGGAGGAGCA43430.11110511341905713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)