FastQCFastQC Report
Sat 22 Oct 2022
EGAF00006811105

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006811105
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3914985
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCATCCTCTCAGACCGGCT71260.18201857733809965No Hit
CCCCTACCCAAGCATTGCTGCTTGCCGCGACTTCGGTTCTGTACTTGAGCCCCGGATATTTTCGGCGCAGGGCCT54350.1388255638271922No Hit
CCGGCATTCTCTCTGCCATACGGTCCAGCTGTCCTTCCGGTCAGCCTTCGTCCTATATGGTACGCTCCCCTACCC53950.1378038485460353No Hit
CCGGCAACAGAGCTTTACGATCCGAAGACCTTCTTCACTCACGCGGCGTTGCTCCGTCAGGCTTTCGCCCATTGC51940.13266972925822193No Hit
CTCGCATTCTGACTCCCAGGCCTTGCATACAGCCATTCGTAGTTTGACTGGGTTCGGTAGGCTTTACGCCCCCTT51850.13243984331996164No Hit
CCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCATCCTCTCAGACCGGCTA47420.12112434658114911No Hit
CTTTATTTGAAACCTCCGGGCCGGCAGATGGCTAGTGCTTCCAGAGGGGCTGCTGAGCTAGGCTCAGGCAGCGTA46680.11923417331100884No Hit
GGCCTATTCACTGCGGCTGACGTAAAGTCAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTT46490.11874885855245933No Hit
CCCGGATATTTTCGGCGCAGGGCCTCTCGACCAGTGAGCTATTACGCACTCTTTCAATGGTGGCTGCTTCTGAGC44270.1130783387420386No Hit
CACGGTTTCAGGTTCTATTTCACTCCCCTCCCGGGGTGCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCG40990.10470027343655212No Hit
CTCTTGAATACGGGTCTTATCACTCGCATTCTGACTCCCAGGCCTTGCATACAGCCATTCGTAGTTTGACTGGGT39940.10201827082351529No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)