FastQCFastQC Report
Sat 22 Oct 2022
EGAF00006811110

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006811110
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3897705
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCGACGGGGTATAGAAGCCACGAAGCTCGCAGGCCAATGGTTTTGAAGCCGAAAGCTAAACCGCAAAATTCA93170.23903810062588113No Hit
AGACGGTCGAAGAAGGTAATATCTTTGACAATACCGTGCCAAATAGATCTCTTTCCTCTTATGGCTTGCCTCAGC74690.1916255847992601No Hit
GTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGAGACAATTAAAAGCTTG62150.15945280620262436No Hit
GGTGGATGCCTTGGCACTAGGAGCCGAAGAAGGACGTGACAAACGACGATATGCCTTGGGTAGCTGTAAGTAAGC45060.115606491512313No Hit
GGCATACGGTGGATGCCTTGGCGTCAGGAGTCGAAGAAGGACGCGATAAGCTGCGAAAAGCCGTGGGGAGCCGCA44160.1132974404168607No Hit
GTTTATGGTGGATGTCTTGGAGCCAACCGGCGAAGAAGGCCGTGATAAGCTGCGAAAAGCTTCGGGGAGGAGCAC43210.11086010870499435No Hit
GGTTTATGGTGGATGTCTTGGAGCCAACCGGCGAAGAAGGCCGTGATAAGCTGCGAAAAGCTTCGGGGAGGAGCA42320.10857671373282482No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)