FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006816748

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006816748
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78597853
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCCGT2328175729.621365102682894No Hit
ACAAGGTA2096096326.668620324781646No Hit
TACTATAG1722300321.9128161172545No Hit
GTGGTACC1564124219.90034257042619No Hit
TACTCTAG1939310.24673829194800015No Hit
CGTCCCGA1035160.13170334309259057No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)