FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006816755

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006816755
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences192047295
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGAAC5980788831.14227044957858No Hit
ACACTGTT4453930523.19184188457328No Hit
CAGGATGG4307217922.427901939467567No Hit
TTTACCCA4174429521.736466009583733No Hit
ACACTGTA2694290.14029304604368417No Hit
TTTACCAA2616290.13623154650525018No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)