FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006816765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006816765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences176874748
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGCGTC6151602334.77942651259636No Hit
AACCGTAA4046963122.88038934760772No Hit
CTAAACGG3701668520.928190947867808No Hit
GGTTTACT3586274220.275784081965163No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)