FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006816768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006816768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences176923477
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGCGTC6154433034.785846990786865No Hit
AACCGTAA4051820522.901542343077512No Hit
CTAAACGG3703244720.931335754835974No Hit
GGTTTACT3590347920.293224849972848No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)