FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006816790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006816790
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80150494
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTATGT2305701528.767152701516725No Hit
GCTGTCCA2096676126.159241139549312No Hit
AAACCGAG1759235121.949148560456784No Hit
TTGAGATC1722996821.497020342756716No Hit
AACCCGAG2079080.2593970287943578No Hit
GTGAGATC1352900.16879496712771352No Hit
GCTGTCAA1172750.14631849929708482No Hit
CGCTATGA888390.11084024011130862No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)