FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006816796

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006816796
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences135806586
Sequences flagged as poor quality0
Sequence length91
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTTTTGTAGCCACAGGCTTCCACGGACTTCACGTCATTATTGGCTCAA2457500.18095587794247328No Hit
CTCAACTTTCCTCACTATCTGCTTCATCCGCCAACTAATATTTCACTTTA1986250.14625579351505089No Hit
CTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACCG1530700.11271176495078082No Hit
CCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAAC1442010.10618115383594137No Hit
CTAAACCAAACCACTTTCACCGCTACACGACCGGGGGTATACTACGGTCA1439150.10597056022010597No Hit
CACGGACTTCACGTCATTATTGGCTCAACTTTCCTCACTATCTGCTTCAT1359350.10009455653351008No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)