FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006816797

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006816797
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences133682910
Sequences flagged as poor quality0
Sequence length8
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAACCCT4935427036.91890758512064No Hit
TTTCTGTC4329990532.39000781775322No Hit
AGCGAAAG3864856028.91062141002167No Hit
CCGTGTGA3978170.2975825406553463No Hit
GAAACCCA3310740.247656188812766No Hit
AGCGACAG2495060.1866401621568531No Hit
TTTCTGTA2019300.1510514694810279No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)