FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006816808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006816808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85688916
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATACCC2431259628.3730932014591No Hit
ACCACGAA2327254627.159342288797305No Hit
TGTCTATG1983431623.14688634875484No Hit
GTGGGTGT1653637819.29815286728566No Hit
CAATACCA2569550.2998695887342069No Hit
TGTCTATA2168960.2531202518654805No Hit
ACCACAAA1115860.13022220983633404No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)