FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006816822

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006816822
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1919123
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATACCC54110128.195222505279755No Hit
ACCACGAA50262926.19055683246983No Hit
TGTCTATG46440924.19902215751674No Hit
GTGGGTGT36390318.961942512282953No Hit
CAATACCA53410.27830420457677807No Hit
TGTCTATA41640.21697410744386889No Hit
GTGGGGGT35900.18706461232552576No Hit
GGGGGTGT24410.12719351495448702No Hit
ACCACAAA22530.11739737369621436No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)