FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006816838

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006816838
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences125981005
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGACGCG3735708329.652948871141326No Hit
GGTCGTAC3048317024.19663980296077No Hit
AAAGAAGA2877239522.838677148193888No Hit
TCCTTCTT2744499021.78502227379437No Hit
TCCTTCTA2204480.1749851098584267No Hit
GGTCGTAA1327260.10535397776831515No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)