FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006816841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006816841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences125241647
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGACGCG3707681229.60421943349244No Hit
GGTCGTAC3025797924.15967828976251No Hit
AAAGAAGA2859236922.829761253459083No Hit
TCCTTCTT2717593121.69879720601247No Hit
TCCTTCTA2264980.18084878746444463No Hit
GGTCGTAA1353040.10803435058627103No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)