FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006816852

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006816852
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4216525
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGACGCG121298828.76748033036683No Hit
AAAGAAGA101260924.0152495241935No Hit
GGTCGTAC99091423.500726308986668No Hit
TCCTTCTT91240221.63871908740017No Hit
CTGCCGCG169850.40281985758414807No Hit
TCCTTCTA67860.16093821333918332No Hit
AAAGAAGC46530.11035153354954613No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)