FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006816855

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006816855
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4124082
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGACGCG118406428.710971314343407No Hit
AAAGAAGA98846223.96804913190378No Hit
GGTCGTAC96816423.475866871706234No Hit
TCCTTCTT89337921.662493616761257No Hit
CTGCCGCG183210.4442443190993777No Hit
TCCTTCTA65720.1593566762251575No Hit
AAAGAAGC52980.1284649529277061No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)