FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006816865

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006816865
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2918887
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCCAGC100692334.49681334015328No Hit
CGATAGCT71655224.54880918651527No Hit
AATGTTAG58882320.1728604087791No Hit
GTCAGCTA55036118.855166369921136No Hit
CGATAGCA110100.37719856918065003No Hit
AATGTTAA34520.11826425620450536No Hit
GTCAGCAA34330.11761332316050604No Hit
TCGCCCGC31390.10754099079546417No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)