FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006816868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006816868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2974895
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCCAGC102480134.448308259619246No Hit
CGATAGCT73133124.583422272046576No Hit
AATGTTAG59941320.149047277298862No Hit
GTCAGCTA56272518.915793666667227No Hit
CGATAGCA110130.3701979397592184No Hit
AATGTTAA35510.11936555743984241No Hit
GTCAGCAA35050.11781928437810409No Hit
TCGCCCGC31240.10501210967109763No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)