FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006816871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006816871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2912537
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCCAGC100459134.49195666870498No Hit
CGATAGCT71257624.465817944973747No Hit
AATGTTAG58722820.162078627670653No Hit
GTCAGCTA55015218.889099091273348No Hit
CGATAGCA109960.37754026815796676No Hit
TCGCCCGC37350.12823871422062622No Hit
AATGTTAA34160.11728606366202388No Hit
GTCAGCAA33540.11515733534028924No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)