FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006816876

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006816876
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences207924962
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAGAGC6303026430.313947586533647No Hit
TTATCGTT5007309424.082290802582904No Hit
CATCTCCA4709886322.65185600947711No Hit
GCGGATAG4354329620.941831890295116No Hit
TTATCGTA6589710.31692731534561974No Hit
CATCTCAA5564370.2676143329053488No Hit
GCGGCTAG2231380.10731660011076495No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)