FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006871123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006871123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59999872
Sequences flagged as poor quality0
Sequence length150
%GC63

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTACTCGTCGCGGCGTAGCGTCCGCGGGGCTCCGGGGGCGGGGAGCG3127090.5211827785232609No Hit
GTCCGCGGGGCTCCGGGGGCGGGGAGCGGGGCGTGGGCGGGAGGAGGGGA2775320.46255432011588293No Hit
CCGCGGGGCTCCGGGGGCGGGGAGCGGGGCGTGGGCGGGAGGAGGGGAGG1844450.30740898913917686No Hit
CACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCT1355100.2258504818143612No Hit
CGCGGGGCTCCGGGGGCGGGGAGCGGGGCGTGGGCGGGAGGAGGGGAGGA1354480.22574714826058295No Hit
GTTTCGGTCCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCC1139730.18995540523819784No Hit
GTCGCGGCGTAGCGTCCGCGGGGCTCCGGGGGCGGGGAGCGGGGCGTGGG1048220.1747037060345729No Hit
GCCGCCGCCGCCGCCGCCGCGCGCCGAGGAGGAGGGGGGAACGGGGGGCG1004580.16743035718476199No Hit
CTCCGACGCACACCACACGCGCGCGCGCGCGCGCCGCCCCCGCCGCTCCC988600.16476701816963876No Hit
CTCCGGGGGCGGGGAGCGGGGCGTGGGCGGGAGGAGGGGAGGAGGCGTGG971090.16184867861051438No Hit
CCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTAACACTCGGGGGGG941400.15690033472071407No Hit
GCACACCACACGCGCGCGCGCGCGCGCCGCCCCCGCCGCTCCCGTCCACT921940.15365699446825484No Hit
CCCGCCGCCGCCGCCGCCGCCGCCCTCCGACGCACACCACACGCGCGCGC912390.1520653244060254No Hit
GCGTCCGCGGGGCTCCGGGGGCGGGGAGCGGGGCGTGGGCGGGAGGAGGG908500.151416989689578No Hit
GCCGCCGCCGCCGCCGCCGCCGCGCGCCGAGGAGGAGGGGGGAACGGGGG827060.13784362739973846No Hit
GCTCCGGGGGCGGGGAGCGGGGCGTGGGCGGGAGGAGGGGAGGAGGCGTG817770.13629529076328697No Hit
CTCGTCGCGGCGTAGCGTCCGCGGGGCTCCGGGGGCGGGGAGCGGGGCGT801460.13357695163083017No Hit
CCGCCGCCGCCGCCGCCGCCGCCCTCCGACGCACACCACACGCGCGCGCG788240.13137361359704233No Hit
TCCTACTCGTCGCGGCGTAGCGTCCGCGGGGCTCCGGGGGCGGGGAGCGG744590.12409859807700924No Hit
GGGGTTTCGGTCCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCC702850.11714191656942202No Hit
CCGGGGGCGGGGAGCGGGGCGTGGGCGGGAGGAGGGGAGGAGGCGTGGGG671470.11191190541206487No Hit
CTTCAAGGCTCACCGCAGCGGCCCTCCTACTCGTCGCGGCGTAGCGTCCG619950.1033252204271369No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)