FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006871193

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006871193
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59999773
Sequences flagged as poor quality0
Sequence length150
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGCGGGGCTCCGGGGGCGGGGAGCGGGGCGTGGGCGGGAGGAGGGGA2395750.39929317732585423No Hit
CTCCTACTCGTCGCGGCGTAGCGTCCGCGGGGCTCCGGGGGCGGGGAGCG2133250.3555430118043947No Hit
GCCGCCGCCGCCGCCGCCGCGCGCCGAGGAGGAGGGGGGAACGGGGGGCG1181980.19699741197354198No Hit
CCGCGGGGCTCCGGGGGCGGGGAGCGGGGCGTGGGCGGGAGGAGGGGAGG957140.15952393686556116No Hit
GCCGCCGCCGCCGCCGCCGCCGCGCGCCGAGGAGGAGGGGGGAACGGGGG937760.15629392464534825No Hit
CCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCCGCCCCGAC826540.13775718784802735No Hit
GTTTCGGTCCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCC759920.12665381250692398No Hit
CCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTAACACTCGGGGGGG708350.11805877998905095No Hit
CTCCGACGCACACCACACGCGCGCGCGCGCGCGCCGCCCCCGCCGCTCCC706510.1177521121621577No Hit
GCTCCGGGGGCGGGGAGCGGGGCGTGGGCGGGAGGAGGGGAGGAGGCGTG693350.11555877053068184No Hit
CGCCGCCGCCGCCGCCGCCGCGCGCCGAGGAGGAGGGGGGAACGGGGGGC676160.11269375969139082No Hit
CCGCCGCCGCCGCCGCCGCCGCGCGCCGAGGAGGAGGGGGGAACGGGGGG666730.11112208707856279No Hit
CTCCGGGGGCGGGGAGCGGGGCGTGGGCGGGAGGAGGGGAGGAGGCGTGG609750.10162538448270461No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)