FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006871240

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006871240
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59999806
Sequences flagged as poor quality0
Sequence length150
%GC68

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCCGCGACCGGCTCCGGGACGGCTGGGAAGGCCCGGCGGGGAAGGTG2089200.34820112585030694No Hit
CGCCGGCAGTCGAGAGTGGACGGGAGCGGCGGGGGCGGCGCGCGCGCGCG1309390.21823237228467038No Hit
CGCTGGAGCGTCGGGCCCATACCCGGCCGTCGCCGGCAGTCGAGAGTGGA1026510.17108555317662194No Hit
CGGGAGCGGCGGGGGCGGCGCGCGCGCGCGCGCGTGTGGTGTGCGTCGGA997560.16626053757573817No Hit
CCGCCCCCCGGCCCCGCGTCCTCCCTCGGGAGGGCGCGCGGGTCGGGGCG991280.16521386752483833No Hit
AAATGGATGGCGCTGGAGCGTCGGGCCCATACCCGGCCGTCGCCGGCAGT960680.160113851034785No Hit
CCGCGACCGGCTCCGGGACGGCTGGGAAGGCCCGGCGGGGAAGGTGGCTC854220.14237046033115508No Hit
CGGAGGGCGGCGGCGGCGGCGGCGGCGGGGGTGTGTGGGGTCCTGGGGGG852190.14203212590387376No Hit
GGGAGCGGTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTCG755180.12586374029276026No Hit
GCGGGGGCGGCGCGCGCGCGCGCGCGTGTGGTGTGCGTCGGAGGGCGGCG734900.12248372936405828No Hit
AATGGATGGCGCTGGAGCGTCGGGCCCATACCCGGCCGTCGCCGGCAGTC720500.12008372160403319No Hit
CCCGTCTCCGCCCCCCGGCCCCGCGTCCTCCCTCGGGAGGGCGCGCGGGT713160.11886038431524262No Hit
CGTCCGTCCGTCCGTCCGTCCTCCTCCTCCCCCGTCTCCGCCCCCCGGCC707180.11786371442600997No Hit
CTCTTTTCTTTGTGAAGGGCAGGGCGCCCTGGAATGGGTTCGCCCCGAGA677270.1128786983077912No Hit
CTCCTCCCCCGTCTCCGCCCCCCGGCCCCGCGTCCTCCCTCGGGAGGGCG675130.11252203048789856No Hit
GTGCGTCGGAGGGCGGCGGCGGCGGCGGCGGCGGGGGTGTGTGGGGTCCT668230.11137202676955323No Hit
ACGGGAGCGGCGGGGGCGGCGCGCGCGCGCGCGCGTGTGGTGTGCGTCGG646200.10770034823112595No Hit
CCGGCGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCT631790.1052986737990453No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)