FastQCFastQC Report
Thu 29 Sep 2022
EGAF00006871308

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006871308
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56602939
Sequences flagged as poor quality0
Sequence length150
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTGGAGCGTCGGGCCCATACCCGGCCGTCGCCGGCAGTCGAGAGTGGA963580.17023497666790766No Hit
CCGGCCGTCGCCGGCAGTCGAGAGTGGACGGGAGCGGCGGGGGCGGCGCG741810.13105503231908153No Hit
GTGCGTCGGAGGGCGGCGGCGGCGGCGGCGGCGGCGGGGGTGTGGGGTCC671110.11856451482139468No Hit
CCCGGCCGTCGCCGGCAGTCGAGAGTGGACGGGAGCGGCGGGGGCGGCGC578710.10224027413134856No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)