FastQCFastQC Report
Thu 29 Sep 2022
EGAF00006871353

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006871353
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59999715
Sequences flagged as poor quality0
Sequence length150
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGATTTTCAAGGGCCAGCGAGAGCTCACCGGACGCCGCCGGAACCGCG5248910.8748224887401549No Hit
CCCGGATTTTCAAGGGCCAGCGAGAGCTCACCGGACGCCGCCGGAACCGC4671240.778543698082566No Hit
CGGATTTTCAAGGGCCAGCGAGAGCTCACCGGACGCCGCCGGAACCGCGA1975530.32925656396867886No Hit
GACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGA1853530.3089231340515534No Hit
CACCCTCTCCCCCGGATTTTCAAGGGCCAGCGAGAGCTCACCGGACGCCG1629790.27163295692321204No Hit
CCCGGCGCGAGATTTACACCCTCTCCCCCGGATTTTCAAGGGCCAGCGAG1533380.2555645472649329No Hit
ACGCTTTCCAAGGCACGGGCCCCTCTCTCGGGGCGAACCCATTCCAGGGC1419830.23663945737075584No Hit
CCGCGACGCTTTCCAAGGCACGGGCCCCTCTCTCGGGGCGAACCCATTCC1411920.23532111777530945No Hit
GCGACGCTTTCCAAGGCACGGGCCCCTCTCTCGGGGCGAACCCATTCCAG1205840.20097428796120115No Hit
CGCTTTCCAAGGCACGGGCCCCTCTCTCGGGGCGAACCCATTCCAGGGCG1142790.1904659047130474No Hit
GCCAGCGAGAGCTCACCGGACGCCGCCGGAACCGCGACGCTTTCCAAGGC1139510.1899192354497017No Hit
CCACTCTCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCCAGCGC1110970.18516254618876105No Hit
GGCCAGCGAGAGCTCACCGGACGCCGCCGGAACCGCGACGCTTTCCAAGG1013730.16895580254006207No Hit
CGCGACGCTTTCCAAGGCACGGGCCCCTCTCTCGGGGCGAACCCATTCCA890830.14847237191043325No Hit
CTCTCCCCCGGATTTTCAAGGGCCAGCGAGAGCTCACCGGACGCCGCCGG870570.1450956892045237No Hit
CTCCCCCGGATTTTCAAGGGCCAGCGAGAGCTCACCGGACGCCGCCGGAA851820.1419706743607032No Hit
CCTCTCCCCCGGATTTTCAAGGGCCAGCGAGAGCTCACCGGACGCCGCCG838890.1398156641244046No Hit
GGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGG798510.13308563215675273No Hit
GACGCTTTCCAAGGCACGGGCCCCTCTCTCGGGGCGAACCCATTCCAGGG774090.1290156128241609No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA771810.12863561101915236No Hit
CCCTCTCCCCCGGATTTTCAAGGGCCAGCGAGAGCTCACCGGACGCCGCC726110.12101890817314716No Hit
CGACGCTTTCCAAGGCACGGGCCCCTCTCTCGGGGCGAACCCATTCCAGG721470.12024557116646305No Hit
CTTCAAGGCTCACCGCAGCGGCCCTCCTACTCGTCGCGGCGTAGCGTCCG700380.11673055447013374No Hit
GTCCACTCTCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCCAGC699740.116623887296798No Hit
GGGAGGAGGAGGACGGACGGACGGACGGACGGGGCCCCCCGAGCCACCTT695090.1158488836155305No Hit
CGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACG678000.11300053675254958No Hit
GTCCGCGGGGCTCCGGGGGCGGGGAGCGGGGCGTGGGCGGGAGGAGGGGA625460.10424382849151867No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)