FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006952510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006952510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4723099
Sequences flagged as poor quality0
Sequence length68
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGG77160.16336731455343198No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAA75610.16008557093552347No Hit
CTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTA51700.10946202906185114No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)